PTSDgene database

SNP Report

Basic Info
Name rs55718212 dbSNP Ensembl
Location 17:45843045 - 45843045(+)
Variant Seq C
Ancestral Allele T
Ref Seq T
Minor Allele Frequence 0.0860623
Annotation downstream_gene_variant; upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000579244, ENST00000581125, ENST00000579599); upstream_gene_variant(ENST00000329196); intron_variant(ENST00000634876); non_coding_transcript_variant(ENST00000634876)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000329196)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000329196)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SPPL2C signal peptide peptidase like 2C 17q21.31 Mapped by Literature SNP, Mapped by LD-proxy, rSNP target
MAPT-AS1 MAPT antisense RNA 1 17q21.31 Mapped by Literature SNP, Mapped by LD-proxy, rSNP target

SNPs in LD with rs55718212 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
DND1P1 No Adipose Subcutaneous cis GTEx