PTSDgene database

SNP Report

Basic Info
Name rs4938013 dbSNP Ensembl
Location 11:113393748 - 113393748(+)
Variant Seq C,T
Ancestral Allele C
Ref Seq A
Minor Allele Frequence 0.339457
Annotation synonymous_variant; NMD_transcript_variant
Variant Effect synonymous_variant(ENST00000303941, ENST00000542948); NMD_transcript_variant(ENST00000542948)
SIFT Annotation deleterious; tolerated
SIFT Variant Effect deleterious(ENST00000303941); tolerated(ENST00000542948)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000542948, ENST00000303941)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Strong transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
ANKK1 ankyrin repeat and kinase domain containing 1 11q23.2 Mapped by Literature SNP, Mapped by LD-proxy, rSNP target

SNPs in LD with rs4938013 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx