PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs4923522 dbSNP Ensembl
Location	11:28116406 - 28116406(+)
Variant Seq	C
Ancestral Allele	T
Ref Seq	T
Minor Allele Frequence	0.404553
Annotation	intron_variant; NMD_transcript_variant
Variant Effect	intron_variant(ENST00000634973, ENST00000407364, ENST00000634627, ENST00000403099, ENST00000634762, ENST00000451385, ENST00000303459, ENST00000406787, ENST00000634721, ENST00000437814, ENST00000532947); NMD_transcript_variant(ENST00000634973, ENST00000634627, ENST00000451385, ENST00000437814, ENST00000532947)
SIFT Annotation	deleterious
SIFT Variant Effect	deleterious(ENST00000263181)
PolyPhen Annotation	probably_damaging
PolyPhen Variant Effect	probably_damaging(ENST00000263181)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	Chromatin interactive region
Chromatin State	Weak transcription;Strong transcription;Enhancers
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
METTL15	methyltransferase like 15	11p14.1	Mapped by LD-proxy, rSNP target
KIF18A	kinesin family member 18A	11p14.1	Mapped by Literature SNP, Mapped by LD-proxy, rSNP target

SNPs in LD with rs4923522 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
LRRC37A4P	No	Adipose Subcutaneous	cis	GTEx