PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs4923457 dbSNP Ensembl
Location	11:27627033 - 27627033(+)
Variant Seq	T
Ancestral Allele	G
Ref Seq	A
Minor Allele Frequence	0.252396
Annotation	intron_variant; non_coding_transcript_variant
Variant Effect	intron_variant(ENST00000530686, ENST00000501176, ENST00000527083, ENST00000532965, ENST00000500662, ENST00000534757, ENST00000499008, ENST00000499568, ENST00000502161); non_coding_transcript_variant(ENST00000530686, ENST00000501176, ENST00000527083, ENST00000532965, ENST00000500662, ENST00000534757, ENST00000499008, ENST00000499568, ENST00000502161)
SIFT Annotation	tolerated_-_low_confidence
SIFT Variant Effect	tolerated_-_low_confidence(ENST00000278193, ENST00000524596)
PolyPhen Annotation	benign
PolyPhen Variant Effect	benign(ENST00000278193, ENST00000524596)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Enhancers;Weak transcription;Genic enhancers;Strong transcription
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
BDNF-AS	BDNF antisense RNA	11p14.1	Mapped by Literature SNP, Mapped by LD-proxy
LINC00678	long intergenic non-protein coding RNA 678	11p14.1	Mapped by LD-proxy

SNPs in LD with rs4923457 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
LRRC37A4P	No	Adipose Subcutaneous	cis	GTEx