PTSDgene database

SNP Report

Basic Info
Name rs4131347 dbSNP Ensembl
Location 12:71930591 - 71930591(+)
Variant Seq A,C
Ancestral Allele C
Ref Seq G
Minor Allele Frequence 0.396166
Annotation downstream_gene_variant
Variant Effect downstream_gene_variant(ENST00000550746)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000319106, ENST00000485960, ENST00000550746)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000319106, ENST00000485960, ENST00000550746)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
TBC1D15 TBC1 domain family member 15 12q15 Mapped by LD-proxy, rSNP target

SNPs in LD with rs4131347 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx