PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs406744 dbSNP Ensembl
Location	11:41814576 - 41814576(+)
Variant Seq	G
Ancestral Allele	G
Ref Seq	T
Minor Allele Frequence	0.488818
Annotation	intron_variant; non_coding_transcript_variant
Variant Effect	intron_variant(ENST00000528720, ENST00000529282); non_coding_transcript_variant(ENST00000528720, ENST00000529282)
SIFT Annotation	tolerated
SIFT Variant Effect	tolerated(ENST00000527150, ENST00000278198, ENST00000530763, ENST00000619527, ENST00000528697)
PolyPhen Annotation	benign
PolyPhen Variant Effect	benign(ENST00000527150, ENST00000278198, ENST00000530763, ENST00000619527, ENST00000528697)
rSNP?	No Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Inactive region
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
LINC01499	long intergenic non-protein coding RNA 1499	11p12	Mapped by Literature SNP, Mapped by LD-proxy

SNPs in LD with rs406744 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
LRRC37A4P	No	Adipose Subcutaneous	cis	GTEx