PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs3958112 dbSNP Ensembl
Location	11:18009562 - 18009562(+)
Variant Seq	G
Ancestral Allele	G
Ref Seq	T
Minor Allele Frequence	0.456669
Annotation	intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect	intron_variant(ENST00000525422, ENST00000532212, ENST00000533328, ENST00000527494, ENST00000530951, ENST00000525523, ENST00000528200, ENST00000524716, ENST00000530925, ENST00000265965, ENST00000529728, ENST00000532265, ENST00000532389, ENST00000530613); NMD_transcript_variant(ENST00000525422, ENST00000533328, ENST00000527494, ENST00000524716, ENST00000530925); non_coding_transcript_variant(ENST00000532212, ENST00000530951, ENST00000525523)
SIFT Annotation	tolerated
SIFT Variant Effect	tolerated(ENST00000250018)
PolyPhen Annotation	possibly_damaging
PolyPhen Variant Effect	possibly_damaging(ENST00000250018)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	Chromatin interactive region
Chromatin State	Weak transcription;Enhancers
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
SERGEF	secretion regulating guanine nucleotide exchange factor	11p14.3	Mapped by LD-proxy, rSNP target

SNPs in LD with rs3958112 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
LRRC37A4P	No	Adipose Subcutaneous	cis	GTEx