PTSDgene database

SNP Report

Basic Info
Name rs3958112 dbSNP Ensembl
Location 11:18009562 - 18009562(+)
Variant Seq G
Ancestral Allele G
Ref Seq T
Minor Allele Frequence 0.456669
Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect intron_variant(ENST00000525422, ENST00000532212, ENST00000533328, ENST00000527494, ENST00000530951, ENST00000525523, ENST00000528200, ENST00000524716, ENST00000530925, ENST00000265965, ENST00000529728, ENST00000532265, ENST00000532389, ENST00000530613); NMD_transcript_variant(ENST00000525422, ENST00000533328, ENST00000527494, ENST00000524716, ENST00000530925); non_coding_transcript_variant(ENST00000532212, ENST00000530951, ENST00000525523)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000250018)
PolyPhen Annotation possibly_damaging
PolyPhen Variant Effect possibly_damaging(ENST00000250018)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SERGEF secretion regulating guanine nucleotide exchange factor 11p14.3 Mapped by LD-proxy, rSNP target

SNPs in LD with rs3958112 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx