PTSDgene database

SNP Report

Basic Info
Name rs3935637 dbSNP Ensembl
Location 17:45851207 - 45851207(+)
Variant Seq C
Ancestral Allele C
Ref Seq T
Minor Allele Frequence 0.351837
Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000329196); intron_variant(ENST00000634876, ENST00000579244, ENST00000579599); non_coding_transcript_variant(ENST00000634876, ENST00000579244, ENST00000579599)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000329196)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000329196)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Enhancers;Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 3)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
ARHGAP27 Rho GTPase activating protein 27 17q21.31 rSNP target
SPPL2C signal peptide peptidase like 2C 17q21.31 Mapped by Literature SNP, Mapped by LD-proxy, rSNP target
MAPT-AS1 MAPT antisense RNA 1 17q21.31 Mapped by Literature SNP, Mapped by LD-proxy, rSNP target

SNPs in LD with rs3935637 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
DND1P1 No Adipose Subcutaneous cis GTEx