PTSDgene database

SNP Report

Basic Info
Name rs3917368 dbSNP Ensembl
Location 2:112825205 - 112825205(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.292332
Annotation downstream_gene_variant
Variant Effect downstream_gene_variant(ENST00000263341)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000263341)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000263341)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Enhancers;Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
IL1B interleukin 1 beta 2q14 1(1/0/0)

SNPs in LD with rs3917368 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx