PTSDgene database

SNP Report

Basic Info
Name rs34614478 dbSNP Ensembl
Location 11:17991759 - 17991759(+)
Variant Seq A,C
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.102835
Annotation downstream_gene_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000533328, ENST00000530925); upstream_gene_variant(ENST00000533241); intron_variant(ENST00000532265, ENST00000532546, ENST00000530613, ENST00000529440, ENST00000527494, ENST00000529151, ENST00000532389, ENST00000525920, ENST00000528200, ENST00000265965, ENST00000529728, ENST00000525422); NMD_transcript_variant(ENST00000532546, ENST00000527494, ENST00000525422); non_coding_transcript_variant(ENST00000529440)
SIFT Annotation deleterious_-_low_confidence
SIFT Variant Effect deleterious_-_low_confidence(ENST00000530925)
PolyPhen Annotation possibly_damaging
PolyPhen Variant Effect possibly_damaging(ENST00000530925)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region
Chromatin State Weak transcription;Strong transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SERGEF secretion regulating guanine nucleotide exchange factor 11p14.3 Mapped by LD-proxy, rSNP target

SNPs in LD with rs34614478 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx