PTSDgene database

SNP Report

Basic Info
Name rs3181067 dbSNP Ensembl
Location 2:112827180 - 112827180(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.330671
Annotation downstream_gene_variant
Variant Effect downstream_gene_variant(ENST00000487639, ENST00000263341, ENST00000491056)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000263341)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000263341)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription;ZNF genes & repeats
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
CKAP2L cytoskeleton associated protein 2 like 2q13 rSNP target
IL1B interleukin 1 beta 2q14 1(1/0/0)

SNPs in LD with rs3181067 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx