SNP Report
Basic Info
| Name | rs3181067 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 2:112827180 - 112827180(+) | ||
| Variant Seq | T | ||
| Ancestral Allele | C | ||
| Ref Seq | C | ||
| Minor Allele Frequence | 0.330671 | ||
| Annotation | downstream_gene_variant | ||
| Variant Effect | downstream_gene_variant(ENST00000487639, ENST00000263341, ENST00000491056) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000263341) | ||
| PolyPhen Annotation | probably_damaging | ||
| PolyPhen Variant Effect | probably_damaging(ENST00000263341) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | Chromatin interactive region | ||
| Chromatin State | Weak transcription;ZNF genes & repeats | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 2)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| CKAP2L | cytoskeleton associated protein 2 like | 2q13 | rSNP target |
| IL1B | interleukin 1 beta | 2q14 | 1(1/0/0) |
SNPs in LD with rs3181067 (count: 0)
SNP related eQTL (count: 1)