SNP Report
Basic Info
| Name | rs28397767 dbSNP Ensembl | ||
|---|---|---|---|
| Location | MT:12501 - 12501(+) | ||
| Variant Seq | A | ||
| Ancestral Allele | A | ||
| Ref Seq | G | ||
| Annotation | synonymous_variant; downstream_gene_variant; upstream_gene_variant | ||
| Variant Effect | synonymous_variant(ENST00000361567); downstream_gene_variant(ENST00000387439, ENST00000387419, ENST00000387461, ENST00000361851, ENST00000387441, ENST00000361227, ENST00000361681, ENST00000361739, ENST00000387456, ENST00000361335, ENST00000387459, ENST00000361381, ENST00000387429, ENST00000387449, ENST00000362079, ENST00000361899, ENST00000387421); upstream_gene_variant(ENST00000387460, ENST00000361789, ENST00000387416) | ||
| SIFT Annotation | deleterious | ||
| SIFT Variant Effect | deleterious(ENST00000361335) | ||
| PolyPhen Annotation | possibly_damaging | ||
| PolyPhen Variant Effect | possibly_damaging(ENST00000361335) | ||
| rSNP? | No Link in rVarBase | ||
| Related Regulatory Elements | N.A. | ||
| Chromatin State | N.A. | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 0; Trend: 1) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Flaquer, A.,2015 | PTSD status | B= ?1.782, P-value=7.4E-06, adjusted P-value=0.015 B= ?1.782, P-value=7.4E-06, adjusted P-value=0.015 | This SNP was found to be associated with full PTSD. This SNP was found to be associated with full PTSD. | Trend |
SNP related genes (count: 21)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| MT-ATP6 | mitochondrially encoded ATP synthase 6 | mitochondria | Mapped by Literature SNP |
| MT-TS2 | mitochondrially encoded tRNA serine 2 (AGU/C) | mitochondria | Mapped by Literature SNP |
| MT-TT | mitochondrially encoded tRNA threonine | mitochondria | Mapped by Literature SNP |
| MT-CYB | mitochondrially encoded cytochrome b | mitochondria | Mapped by Literature SNP |
| MT-CO3 | mitochondrially encoded cytochrome c oxidase III | mitochondria | Mapped by Literature SNP |
| MT-TS1 | mitochondrially encoded tRNA serine 1 (UCN) | mitochondria | Mapped by Literature SNP |
| MT-ATP8 | mitochondrially encoded ATP synthase 8 | mitochondria | 1(0/0/1) |
| MT-ND4L | mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L | mitochondria | Mapped by Literature SNP |
| MT-CO2 | mitochondrially encoded cytochrome c oxidase II | mitochondria | Mapped by Literature SNP |
| MT-TP | mitochondrially encoded tRNA proline | mitochondria | Mapped by Literature SNP |
| MT-TK | mitochondrially encoded tRNA lysine | mitochondria | Mapped by Literature SNP |
| MT-ND6 | mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 | mitochondria | Mapped by Literature SNP |
| MT-ND5 | mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 | mitochondria | 1(0/0/1) |
| MT-TH | mitochondrially encoded tRNA histidine | mitochondria | Mapped by Literature SNP |
| MT-TG | mitochondrially encoded tRNA glycine | mitochondria | Mapped by Literature SNP |
| MT-TD | mitochondrially encoded tRNA aspartic acid | mitochondria | Mapped by Literature SNP |
| MT-ND4 | mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 | mitochondria | Mapped by Literature SNP |
| MT-TL2 | mitochondrially encoded tRNA leucine 2 (CUN) | mitochondria | Mapped by Literature SNP |
| MT-TE | mitochondrially encoded tRNA glutamic acid | mitochondria | Mapped by Literature SNP |
| MT-ND3 | mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 | mitochondria | Mapped by Literature SNP |
| MT-TR | mitochondrially encoded tRNA arginine | mitochondria | Mapped by Literature SNP |
SNPs in LD with rs28397767 (count: 0)
SNP related eQTL (count: 1)