PTSDgene database

SNP Report

Basic Info
Name rs258763 dbSNP Ensembl
Location 5:143272796 - 143272796(+)
Variant Seq A
Ancestral Allele A
Ref Seq T
Minor Allele Frequence 0.375
Annotation downstream_gene_variant
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000378004, ENST00000418236, ENST00000443674, ENST00000274498)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000415690)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 0)

SNPs in LD with rs258763 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1-IT1 Yes Adipose Subcutaneous cis GTEx