PTSDgene database

SNP Report

Basic Info
Name rs2299625 dbSNP Ensembl
Location 11:18003069 - 18003069(+)
Variant Seq C
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.301717
Annotation downstream_gene_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000530951); upstream_gene_variant(ENST00000529151); intron_variant(ENST00000527494, ENST00000532265, ENST00000265965, ENST00000530613, ENST00000525422, ENST00000525523, ENST00000530925, ENST00000528200, ENST00000524716, ENST00000529728, ENST00000532389, ENST00000532212, ENST00000525920, ENST00000533328); NMD_transcript_variant(ENST00000527494, ENST00000525422, ENST00000530925, ENST00000524716, ENST00000533328); non_coding_transcript_variant(ENST00000525523, ENST00000532212)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000528200, ENST00000525422, ENST00000265965)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000528200, ENST00000525422, ENST00000265965)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Strong transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SERGEF secretion regulating guanine nucleotide exchange factor 11p14.3 Mapped by LD-proxy, rSNP target

SNPs in LD with rs2299625 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx