PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs2299625 dbSNP Ensembl
Location	11:18003069 - 18003069(+)
Variant Seq	C
Ancestral Allele	A
Ref Seq	A
Minor Allele Frequence	0.301717
Annotation	downstream_gene_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect	downstream_gene_variant(ENST00000530951); upstream_gene_variant(ENST00000529151); intron_variant(ENST00000527494, ENST00000532265, ENST00000265965, ENST00000530613, ENST00000525422, ENST00000525523, ENST00000530925, ENST00000528200, ENST00000524716, ENST00000529728, ENST00000532389, ENST00000532212, ENST00000525920, ENST00000533328); NMD_transcript_variant(ENST00000527494, ENST00000525422, ENST00000530925, ENST00000524716, ENST00000533328); non_coding_transcript_variant(ENST00000525523, ENST00000532212)
SIFT Annotation	deleterious
SIFT Variant Effect	deleterious(ENST00000528200, ENST00000525422, ENST00000265965)
PolyPhen Annotation	probably_damaging
PolyPhen Variant Effect	probably_damaging(ENST00000528200, ENST00000525422, ENST00000265965)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Weak transcription;Strong transcription
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
SERGEF	secretion regulating guanine nucleotide exchange factor	11p14.3	Mapped by LD-proxy, rSNP target

SNPs in LD with rs2299625 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
LRRC37A4P	No	Adipose Subcutaneous	cis	GTEx