PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs2283236 dbSNP Ensembl
Location	11:17979720 - 17979720(+)
Variant Seq	C
Ancestral Allele	T
Ref Seq	T
Minor Allele Frequence	0.102636
Annotation	intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect	intron_variant(ENST00000529440, ENST00000528200, ENST00000529728, ENST00000529151, ENST00000525920, ENST00000533241, ENST00000525422, ENST00000265965, ENST00000532546, ENST00000532265, ENST00000527494); NMD_transcript_variant(ENST00000525422, ENST00000532546, ENST00000527494); non_coding_transcript_variant(ENST00000529440)
SIFT Annotation	deleterious; tolerated
SIFT Variant Effect	deleterious(ENST00000529728); tolerated(ENST00000533241, ENST00000265965, ENST00000528200, ENST00000530613, ENST00000525422, ENST00000529151, ENST00000532265, ENST00000532546)
PolyPhen Annotation	benign; probably_damaging
PolyPhen Variant Effect	benign(ENST00000533241, ENST00000265965, ENST00000528200, ENST00000530613, ENST00000532265); probably_damaging(ENST00000525422, ENST00000529151, ENST00000529728, ENST00000532546)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Weak transcription;Enhancers;Strong transcription;Genic enhancers
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
SERGEF	secretion regulating guanine nucleotide exchange factor	11p14.3	Mapped by LD-proxy, rSNP target

SNPs in LD with rs2283236 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
LRRC37A4P	No	Adipose Subcutaneous	cis	GTEx