SNP Report

Basic Info
Name |
rs2237908
dbSNP
Ensembl
|
Location |
11:18010991 - 18010991(+) |
Variant Seq |
G |
Ancestral Allele |
A |
Ref Seq |
A |
Minor Allele Frequence |
0.303115 |
Annotation |
upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
|
Variant Effect |
upstream_gene_variant(ENST00000530951); intron_variant(ENST00000525523, ENST00000532265, ENST00000524716, ENST00000530613, ENST00000532389, ENST00000529728, ENST00000533328, ENST00000530925, ENST00000525422, ENST00000527494, ENST00000265965, ENST00000528200, ENST00000532212); NMD_transcript_variant(ENST00000524716, ENST00000533328, ENST00000530925, ENST00000525422, ENST00000527494); non_coding_transcript_variant(ENST00000525523, ENST00000532212)
|
SIFT Annotation |
tolerated_-_low_confidence; deleterious_-_low_confidence
|
SIFT Variant Effect |
tolerated_-_low_confidence(ENST00000265965); deleterious_-_low_confidence(ENST00000525422, ENST00000528200)
|
PolyPhen Annotation |
unknown; benign
|
PolyPhen Variant Effect |
unknown(ENST00000524716); benign(ENST00000525422, ENST00000528200, ENST00000265965)
|
rSNP? |
Yes
Link in rVarBase
|
Related Regulatory Elements |
TF binding region;Chromatin interactive region
|
Chromatin State |
Weak transcription;Enhancers
|
No. of Marker's Association Results |
0 (Positive: 0; Negative: 0; Trend: 0) |
Source |
LD-proxy |

SNP related association results

SNP related genes (count: 1)

SNPs in LD with rs2237908 (count: 0)

SNP related eQTL (count: 1)