PTSDgene database

SNP Report

Basic Info
Name rs2237908 dbSNP Ensembl
Location 11:18010991 - 18010991(+)
Variant Seq G
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.303115
Annotation upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect upstream_gene_variant(ENST00000530951); intron_variant(ENST00000525523, ENST00000532265, ENST00000524716, ENST00000530613, ENST00000532389, ENST00000529728, ENST00000533328, ENST00000530925, ENST00000525422, ENST00000527494, ENST00000265965, ENST00000528200, ENST00000532212); NMD_transcript_variant(ENST00000524716, ENST00000533328, ENST00000530925, ENST00000525422, ENST00000527494); non_coding_transcript_variant(ENST00000525523, ENST00000532212)
SIFT Annotation tolerated_-_low_confidence; deleterious_-_low_confidence
SIFT Variant Effect tolerated_-_low_confidence(ENST00000265965); deleterious_-_low_confidence(ENST00000525422, ENST00000528200)
PolyPhen Annotation unknown; benign
PolyPhen Variant Effect unknown(ENST00000524716); benign(ENST00000525422, ENST00000528200, ENST00000265965)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region;Chromatin interactive region
Chromatin State Weak transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SERGEF secretion regulating guanine nucleotide exchange factor 11p14.3 Mapped by LD-proxy, rSNP target

SNPs in LD with rs2237908 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx