PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs211141 dbSNP Ensembl
Location	11:17972767 - 17972767(+)
Variant Seq	A
Ancestral Allele	G
Ref Seq	G
Minor Allele Frequence	0.365415
Annotation	intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect	intron_variant(ENST00000532265, ENST00000529440, ENST00000265965, ENST00000529151, ENST00000527494, ENST00000529728, ENST00000528200, ENST00000533241, ENST00000525920, ENST00000532546, ENST00000525422); NMD_transcript_variant(ENST00000527494, ENST00000532546, ENST00000525422); non_coding_transcript_variant(ENST00000529440)
SIFT Annotation	deleterious
SIFT Variant Effect	deleterious(ENST00000265965, ENST00000533241, ENST00000525422, ENST00000529151, ENST00000529728)
PolyPhen Annotation	probably_damaging
PolyPhen Variant Effect	probably_damaging(ENST00000265965, ENST00000533241, ENST00000525422, ENST00000529151, ENST00000529728)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	Chromatin interactive region
Chromatin State	Weak transcription;Enhancers;Strong transcription;ZNF genes & repeats
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
SERGEF	secretion regulating guanine nucleotide exchange factor	11p14.3	Mapped by LD-proxy, rSNP target
KCNC1	potassium channel, voltage gated Shaw related subfamily C, member 1	11p15	rSNP target

SNPs in LD with rs211141 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
LRRC37A4P	No	Adipose Subcutaneous	cis	GTEx