PTSDgene database

SNP Report

Basic Info
Name rs211130 dbSNP Ensembl
Location 11:17995326 - 17995326(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.458866
Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000532212); intron_variant(ENST00000533328, ENST00000527494, ENST00000529440, ENST00000528200, ENST00000532265, ENST00000530613, ENST00000530925, ENST00000532546, ENST00000525422, ENST00000532389, ENST00000265965, ENST00000525920, ENST00000529728, ENST00000529151); NMD_transcript_variant(ENST00000533328, ENST00000527494, ENST00000530925, ENST00000532546, ENST00000525422); non_coding_transcript_variant(ENST00000529440)
SIFT Annotation tolerated_-_low_confidence; tolerated
SIFT Variant Effect tolerated_-_low_confidence(ENST00000530925); tolerated(ENST00000530613, ENST00000525422, ENST00000527494, ENST00000265965, ENST00000529728, ENST00000532265, ENST00000532389, ENST00000528200)
PolyPhen Annotation benign; possibly_damaging
PolyPhen Variant Effect benign(ENST00000530613, ENST00000525422, ENST00000527494, ENST00000265965, ENST00000529728, ENST00000532265, ENST00000532389, ENST00000528200); possibly_damaging(ENST00000530925)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Enhancers;Strong transcription;Genic enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SERGEF secretion regulating guanine nucleotide exchange factor 11p14.3 Mapped by LD-proxy, rSNP target

SNPs in LD with rs211130 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx