PTSDgene database

SNP Report

Basic Info
Name rs2073836 dbSNP Ensembl
Location 9:133667012 - 133667012(+)
Variant Seq T
Ancestral Allele T
Ref Seq A
Minor Allele Frequence 0.368411
Annotation non_coding_transcript_exon_variant; intron_variant; non_coding_transcript_variant
Variant Effect non_coding_transcript_exon_variant(ENST00000469828); intron_variant(ENST00000371872, ENST00000439388, ENST00000371868, ENST00000422262); non_coding_transcript_variant(ENST00000469828)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000393056)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000393056)
rSNP? Yes Link in rVarBase
Related Regulatory Elements lncRNA
Chromatin State Weak transcription;Genic enhancers;Enhancers;Strong transcription;Bivalent Enhancer
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SARDH sarcosine dehydrogenase 9q33-q34 Mapped by LD-proxy

SNPs in LD with rs2073836 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx