PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs17721184 dbSNP Ensembl
Location	11:17980925 - 17980925(+)
Variant Seq	T
Ancestral Allele	C
Ref Seq	C
Minor Allele Frequence	0.102037
Annotation	intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect	intron_variant(ENST00000525920, ENST00000532546, ENST00000529151, ENST00000528200, ENST00000529440, ENST00000525422, ENST00000533241, ENST00000529728, ENST00000265965, ENST00000527494, ENST00000532265); NMD_transcript_variant(ENST00000532546, ENST00000525422, ENST00000527494); non_coding_transcript_variant(ENST00000529440)
SIFT Annotation	tolerated
SIFT Variant Effect	tolerated(ENST00000530613, ENST00000528200, ENST00000532546, ENST00000265965, ENST00000529151, ENST00000525422, ENST00000529728, ENST00000532265, ENST00000533241)
PolyPhen Annotation	benign
PolyPhen Variant Effect	benign(ENST00000530613, ENST00000528200, ENST00000532546, ENST00000265965, ENST00000529151, ENST00000525422, ENST00000529728, ENST00000532265, ENST00000533241)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Weak transcription;Strong transcription
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
SERGEF	secretion regulating guanine nucleotide exchange factor	11p14.3	Mapped by LD-proxy, rSNP target

SNPs in LD with rs17721184 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
LRRC37A4P	No	Adipose Subcutaneous	cis	GTEx