SNP Report
Basic Info
| Name | rs17115439 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 11:113393550 - 113393550(+) | ||
| Variant Seq | C | ||
| Ancestral Allele | C | ||
| Ref Seq | T | ||
| Minor Allele Frequence | 0.474042 | ||
| Annotation | synonymous_variant; upstream_gene_variant | ||
| Variant Effect | synonymous_variant(ENST00000303941); upstream_gene_variant(ENST00000542948) | ||
| SIFT Annotation | deleterious; tolerated | ||
| SIFT Variant Effect | deleterious(ENST00000303941, ENST00000542948); tolerated(ENST00000303941) | ||
| PolyPhen Annotation | benign; possibly_damaging | ||
| PolyPhen Variant Effect | benign(ENST00000303941, ENST00000542948); possibly_damaging(ENST00000303941) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription;Strong transcription;Enhancers | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| ANKK1 | ankyrin repeat and kinase domain containing 1 | 11q23.2 | Mapped by Literature SNP, Mapped by LD-proxy, rSNP target |
SNPs in LD with rs17115439 (count: 0)
SNP related eQTL (count: 1)