PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs17054232 dbSNP Ensembl
Location	4:168475606 - 168475606(+)
Variant Seq	A
Ancestral Allele	G
Ref Seq	G
Minor Allele Frequence	0.343251
Annotation	downstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect	downstream_gene_variant(ENST00000384442, ENST00000505150); intron_variant(ENST00000513901, ENST00000505696, ENST00000511577, ENST00000512371, ENST00000260184, ENST00000514748, ENST00000505890, ENST00000515088); non_coding_transcript_variant(ENST00000513901, ENST00000515088)
SIFT Annotation	deleterious
SIFT Variant Effect	deleterious(ENST00000505890, ENST00000260184, ENST00000511577, ENST00000514748, ENST00000512371, ENST00000505696)
PolyPhen Annotation	possibly_damaging
PolyPhen Variant Effect	possibly_damaging(ENST00000505890, ENST00000260184, ENST00000511577, ENST00000514748, ENST00000512371, ENST00000505696)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	Chromatin interactive region
Chromatin State	Enhancers;Weak transcription;Genic enhancers
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
DDX60L	DEAD-box helicase 60-like	4q32.3	1(0/0/1)

SNPs in LD with rs17054232 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
CRHR1-IT1	Yes	Adipose Subcutaneous	cis	GTEx