PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs1535721 dbSNP Ensembl
Location	11:34478532 - 34478532(+)
Variant Seq	G
Ancestral Allele	A
Ref Seq	A
Minor Allele Frequence	0.420327
Annotation	downstream_gene_variant
Variant Effect	downstream_gene_variant(ENST00000312319, ENST00000429939, ENST00000620316, ENST00000257832, ENST00000528709)
SIFT Annotation	deleterious
SIFT Variant Effect	deleterious(ENST00000620316, ENST00000312319, ENST00000429939, ENST00000257832)
PolyPhen Annotation	probably_damaging
PolyPhen Variant Effect	probably_damaging(ENST00000620316, ENST00000312319, ENST00000429939, ENST00000257832)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Weak transcription;Enhancers
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
ELF5	E74-like factor 5 (ets domain transcription factor)	11p13-p12	Mapped by Literature SNP, Mapped by LD-proxy

SNPs in LD with rs1535721 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
LRRC37A4P	No	Adipose Subcutaneous	cis	GTEx