PTSDgene database

SNP Report

Basic Info
Name rs1535721 dbSNP Ensembl
Location 11:34478532 - 34478532(+)
Variant Seq G
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.420327
Annotation downstream_gene_variant
Variant Effect downstream_gene_variant(ENST00000312319, ENST00000429939, ENST00000620316, ENST00000257832, ENST00000528709)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000620316, ENST00000312319, ENST00000429939, ENST00000257832)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000620316, ENST00000312319, ENST00000429939, ENST00000257832)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
ELF5 E74-like factor 5 (ets domain transcription factor) 11p13-p12 Mapped by Literature SNP, Mapped by LD-proxy

SNPs in LD with rs1535721 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx