PTSDgene database

SNP Report

Basic Info
Name rs1518521 dbSNP Ensembl
Location 11:17980903 - 17980903(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.301717
Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect intron_variant(ENST00000529728, ENST00000265965, ENST00000532546, ENST00000529440, ENST00000533241, ENST00000529151, ENST00000525422, ENST00000532265, ENST00000525920, ENST00000527494, ENST00000528200); NMD_transcript_variant(ENST00000532546, ENST00000525422, ENST00000527494); non_coding_transcript_variant(ENST00000529440)
SIFT Annotation deleterious; tolerated
SIFT Variant Effect deleterious(ENST00000265965, ENST00000529151, ENST00000529728, ENST00000532389, ENST00000530613); tolerated(ENST00000532546, ENST00000528200, ENST00000533241, ENST00000525422, ENST00000532265)
PolyPhen Annotation possibly_damaging; probably_damaging
PolyPhen Variant Effect possibly_damaging(ENST00000528200, ENST00000533241, ENST00000532265); probably_damaging(ENST00000265965, ENST00000529151, ENST00000529728, ENST00000532389, ENST00000532546, ENST00000525422, ENST00000530613)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Strong transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SERGEF secretion regulating guanine nucleotide exchange factor 11p14.3 Mapped by LD-proxy, rSNP target

SNPs in LD with rs1518521 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx