PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs1478273 dbSNP Ensembl
Location	8:4610666 - 4610666(+)
Variant Seq	G
Ancestral Allele	G
Ref Seq	C
Minor Allele Frequence	0.475639
Annotation	intron_variant
Variant Effect	intron_variant(ENST00000520002, ENST00000400186, ENST00000602723, ENST00000635120, ENST00000602557)
SIFT Annotation	tolerated
SIFT Variant Effect	tolerated(ENST00000520002, ENST00000602723, ENST00000635120, ENST00000602557, ENST00000400186)
PolyPhen Annotation	benign
PolyPhen Variant Effect	benign(ENST00000520002, ENST00000602723, ENST00000635120, ENST00000602557, ENST00000400186)
rSNP?	No Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Inactive region
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
CSMD1	CUB and Sushi multiple domains 1	8p23.2	1(0/0/1)

SNPs in LD with rs1478273 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
RP11-259G18.3	No	Adipose Subcutaneous	cis	GTEx