PTSDgene database

SNP Report

Basic Info
Name rs1323690 dbSNP Ensembl
Location 11:34479140 - 34479140(+)
Variant Seq A,C,T
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.366214
Annotation downstream_gene_variant; 3_prime_UTR_variant
Variant Effect downstream_gene_variant(ENST00000429939, ENST00000528709); 3_prime_UTR_variant(ENST00000257832, ENST00000312319, ENST00000620316)
SIFT Annotation deleterious; tolerated
SIFT Variant Effect deleterious(ENST00000620316, ENST00000429939); tolerated(ENST00000257832, ENST00000312319)
PolyPhen Annotation probably_damaging; possibly_damaging
PolyPhen Variant Effect probably_damaging(ENST00000620316); possibly_damaging(ENST00000257832, ENST00000429939, ENST00000312319)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
ELF5 E74-like factor 5 (ets domain transcription factor) 11p13-p12 Mapped by Literature SNP, Mapped by LD-proxy

SNPs in LD with rs1323690 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx