PTSDgene database

SNP Report

Basic Info
Name rs129927 dbSNP Ensembl
Location 9:133664492 - 133664492(+)
Variant Seq A,C
Ancestral Allele C
Ref Seq G
Minor Allele Frequence 0.34405
Annotation intron_variant; non_coding_transcript_variant
Variant Effect intron_variant(ENST00000371868, ENST00000469828, ENST00000422262, ENST00000439388, ENST00000371872); non_coding_transcript_variant(ENST00000469828)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000371872, ENST00000371868, ENST00000439388)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000371872, ENST00000371868, ENST00000439388)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Strong transcription;Bivalent Enhancer;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SARDH sarcosine dehydrogenase 9q33-q34 Mapped by LD-proxy

SNPs in LD with rs129927 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx