PTSDgene database

SNP Report

Basic Info
Name rs11214620 dbSNP Ensembl
Location 11:113489499 - 113489499(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.270168
Annotation upstream_gene_variant
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000362072, ENST00000543292, ENST00000538967, ENST00000544518, ENST00000542968, ENST00000346454)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000362072, ENST00000543292, ENST00000538967, ENST00000544518, ENST00000542968, ENST00000346454)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 0)

SNPs in LD with rs11214620 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-109L13.1 No Adipose Subcutaneous cis GTEx