PTSDgene database

SNP Report

Basic Info
Name rs11214601 dbSNP Ensembl
Location 11:113402040 - 113402040(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.208866
Annotation downstream_gene_variant; upstream_gene_variant
Variant Effect downstream_gene_variant(ENST00000303941); upstream_gene_variant(ENST00000546284)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000303941)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000303941)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region
Chromatin State Weak transcription;Enhancers;Bivalent Enhancer
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
ANKK1 ankyrin repeat and kinase domain containing 1 11q23.2 Mapped by Literature SNP, Mapped by LD-proxy, rSNP target

SNPs in LD with rs11214601 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx