SNP Report
Basic Info
| Name | rs11197945 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 10:117302962 - 117302962(+) | ||
| Variant Seq | A | ||
| Ancestral Allele | G | ||
| Ref Seq | G | ||
| Minor Allele Frequence | 0.171925 | ||
| Annotation | intron_variant; non_coding_transcript_variant | ||
| Variant Effect | intron_variant(ENST00000489491, ENST00000334464, ENST00000482496, ENST00000489302); non_coding_transcript_variant(ENST00000489491, ENST00000482496, ENST00000489302) | ||
| SIFT Annotation | deleterious | ||
| SIFT Variant Effect | deleterious(ENST00000334464) | ||
| PolyPhen Annotation | possibly_damaging | ||
| PolyPhen Variant Effect | possibly_damaging(ENST00000334464) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription;ZNF genes & repeats | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| PDZD8 | PDZ domain containing 8 | 10q26.12 | Mapped by Literature SNP, Mapped by LD-proxy, rSNP target |
SNPs in LD with rs11197945 (count: 0)
SNP related eQTL (count: 1)