PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs10789942 dbSNP Ensembl
Location	11:113365477 - 113365477(+)
Variant Seq	G
Ancestral Allele	A
Ref Seq	A
Minor Allele Frequence	0.262181
Annotation	upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; splice_acceptor_variant
Variant Effect	upstream_gene_variant(ENST00000602900); intron_variant(ENST00000393020, ENST00000480233, ENST00000494714, ENST00000464224, ENST00000314756, ENST00000462711, ENST00000529221, ENST00000483239); NMD_transcript_variant(ENST00000494714, ENST00000464224, ENST00000462711); non_coding_transcript_variant(ENST00000496311, ENST00000480233); splice_acceptor_variant(ENST00000496311)
SIFT Annotation	tolerated
SIFT Variant Effect	tolerated(ENST00000494714, ENST00000314756, ENST00000529221, ENST00000483239)
PolyPhen Annotation	benign
PolyPhen Variant Effect	benign(ENST00000494714, ENST00000314756, ENST00000529221, ENST00000483239)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	Chromatin interactive region
Chromatin State	Strong transcription;Weak transcription;Genic enhancers;Enhancers
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
TTC12	tetratricopeptide repeat domain 12	11q23.2	Mapped by LD-proxy

SNPs in LD with rs10789942 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
LRRC37A4P	No	Adipose Subcutaneous	cis	GTEx