PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs10768754 dbSNP Ensembl
Location	11:41802383 - 41802383(+)
Variant Seq	C
Ancestral Allele	C
Ref Seq	T
Minor Allele Frequence	0.441494
Annotation	downstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect	downstream_gene_variant(ENST00000531247); intron_variant(ENST00000529282, ENST00000528720); non_coding_transcript_variant(ENST00000529282, ENST00000528720)
SIFT Annotation	tolerated
SIFT Variant Effect	tolerated(ENST00000527150, ENST00000278198, ENST00000530763, ENST00000619527, ENST00000528697)
PolyPhen Annotation	benign
PolyPhen Variant Effect	benign(ENST00000527150, ENST00000278198, ENST00000530763, ENST00000619527, ENST00000528697)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Weak transcription
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
LINC01499	long intergenic non-protein coding RNA 1499	11p12	Mapped by Literature SNP, Mapped by LD-proxy

SNPs in LD with rs10768754 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
LRRC37A4P	No	Adipose Subcutaneous	cis	GTEx