PTSDgene database

SNP Report

Basic Info
Name rs79485117 dbSNP Ensembl
Location 7:140135860 - 140135860(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.0335463
Annotation intron_variant
Variant Effect intron_variant(ENST00000397560)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000397560)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000397560)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Strong transcription
No. of Marker's Association Results 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Nievergelt, C. M.,2015 PTSD In meta-analysis: P-value=4.4E-07. In meta-analysis: P-value=4.4E-07. It met the threshold for suggestive evidence of association ...... It met the threshold for suggestive evidence of association (P-value<5E-06). More... Trend
G*E study related association result (count: 1)
Reference Phenotype Environment Statistical Values Author Comments Marker's Category
Nievergelt, C. M.,2015 PTSD Childhood trauma In subjects of African, gene and childhood trauma interactio...... In subjects of African, gene and childhood trauma interaction: P-value=0.027. More... It showed a significant interaction effect with childhood tr...... It showed a significant interaction effect with childhood trauma on PTSD. More... Significant


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
KDM7A lysine (K)-specific demethylase 7A 7q34 1(0/0/1)

SNPs in LD with rs79485117 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx