PTSDgene database

SNP Report

Basic Info
Name rs7125415 dbSNP Ensembl
Location 11:113439959 - 113439959(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.196086
Annotation intron_variant; non_coding_transcript_variant
Variant Effect intron_variant(ENST00000540600, ENST00000362072, ENST00000543292, ENST00000542616, ENST00000346454); non_coding_transcript_variant(ENST00000540600)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000362072, ENST00000543292, ENST00000538967, ENST00000544518, ENST00000542968, ENST00000346454)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000362072, ENST00000543292, ENST00000538967, ENST00000544518, ENST00000542968, ENST00000346454)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
DRD2 dopamine receptor D2 11q23.2 18(11/7/0)

SNPs in LD with rs7125415 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
TMPRSS5 No Adipose Subcutaneous cis GTEx