PTSDgene database

SNP Report

Basic Info
Name rs7118900 dbSNP Ensembl
Location 11:113396099 - 113396099(+)
Variant Seq A
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.320487
Annotation missense_variant; 3_prime_UTR_variant; NMD_transcript_variant
Variant Effect missense_variant(ENST00000303941); 3_prime_UTR_variant(ENST00000542948); NMD_transcript_variant(ENST00000542948)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000303941)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000303941)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Strong transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
ANKK1 ankyrin repeat and kinase domain containing 1 11q23.2 Mapped by Literature SNP, Mapped by LD-proxy, rSNP target

SNPs in LD with rs7118900 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx