PTSDgene database

SNP Report

Basic Info
Name rs62061713 dbSNP Ensembl
Location 17:45933039 - 45933039(+)
Variant Seq G
Ancestral Allele G
Ref Seq A
Minor Allele Frequence 0.0860623
Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000617458); intron_variant(ENST00000535772, ENST00000340799, ENST00000571311, ENST00000334239, ENST00000351559, ENST00000570299, ENST00000446361, ENST00000262410, ENST00000344290); NMD_transcript_variant(ENST00000571311); non_coding_transcript_variant(ENST00000570299)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000329196)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000329196)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Active TSS;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
MAPT microtubule associated protein tau 17q21 Mapped by LD-proxy, rSNP target

SNPs in LD with rs62061713 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
AC005154.6 No Adipose Subcutaneous cis GTEx