PTSDgene database

SNP Report

Basic Info
Name rs62054818 dbSNP Ensembl
Location 17:45848690 - 45848690(+)
Variant Seq C
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.086262
Annotation downstream_gene_variant; upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000329196); upstream_gene_variant(ENST00000581125); intron_variant(ENST00000579599, ENST00000579244, ENST00000634876); non_coding_transcript_variant(ENST00000579599, ENST00000579244, ENST00000634876)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000329196)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000329196)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription;Enhancers;Flanking Active TSS
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SPPL2C signal peptide peptidase like 2C 17q21.31 Mapped by Literature SNP, Mapped by LD-proxy, rSNP target
MAPT-AS1 MAPT antisense RNA 1 17q21.31 Mapped by Literature SNP, Mapped by LD-proxy, rSNP target

SNPs in LD with rs62054818 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
DND1P1 No Adipose Subcutaneous cis GTEx