PTSDgene database

SNP Report

Basic Info
Name rs62054396 dbSNP Ensembl
Location 17:45734144 - 45734144(+)
Variant Seq C
Ancestral Allele C
Ref Seq T
Minor Allele Frequence 0.0952476
Annotation upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect upstream_gene_variant(ENST00000578936); intron_variant(ENST00000587305, ENST00000580347, ENST00000634540); non_coding_transcript_variant(ENST00000587305, ENST00000580347)
SIFT Annotation deleterious; tolerated
SIFT Variant Effect deleterious(ENST00000430334); tolerated(ENST00000430334, ENST00000581448, ENST00000584420, ENST00000589780)
PolyPhen Annotation benign; possibly_damaging
PolyPhen Variant Effect benign(ENST00000430334, ENST00000581448, ENST00000584420, ENST00000589780); possibly_damaging(ENST00000430334, ENST00000584420)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 0)

SNPs in LD with rs62054396 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
DND1P1 No Adipose Subcutaneous cis GTEx