PTSDgene database

SNP Report

Basic Info
Name rs522638 dbSNP Ensembl
Location 2:31580605 - 31580605(+)
Variant Seq G
Ancestral Allele G
Ref Seq A
Minor Allele Frequence 0.357628
Annotation intron_variant
Variant Effect intron_variant(ENST00000622030)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000622030)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000622030)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Bivalent/Poised TSS;Bivalent Enhancer;Flanking Bivalent TSS/Enh;Active TSS;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SRD5A2 steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2) 2p23.1 11(11/0/0)

SNPs in LD with rs522638 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx