PTSDgene database

SNP Report

Basic Info
Name rs2519127 dbSNP Ensembl
Location 9:133667354 - 133667354(+)
Variant Seq C
Ancestral Allele T
Ref Seq T
Minor Allele Frequence 0.279553
Annotation upstream_gene_variant; intron_variant
Variant Effect upstream_gene_variant(ENST00000469828); intron_variant(ENST00000439388, ENST00000371872, ENST00000422262, ENST00000371868)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000393056)
PolyPhen Annotation possibly_damaging
PolyPhen Variant Effect possibly_damaging(ENST00000393056)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Strong transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SARDH sarcosine dehydrogenase 9q33-q34 Mapped by LD-proxy

SNPs in LD with rs2519127 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx