PTSDgene database

SNP Report

Basic Info
Name rs211137 dbSNP Ensembl
Location 11:18004914 - 18004914(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.46266
Annotation downstream_gene_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000530951); upstream_gene_variant(ENST00000525920, ENST00000529151); intron_variant(ENST00000530613, ENST00000532212, ENST00000524716, ENST00000532389, ENST00000533328, ENST00000530925, ENST00000525523, ENST00000265965, ENST00000525422, ENST00000529728, ENST00000532265, ENST00000527494, ENST00000528200); NMD_transcript_variant(ENST00000524716, ENST00000533328, ENST00000530925, ENST00000525422, ENST00000527494); non_coding_transcript_variant(ENST00000532212, ENST00000525523)
SIFT Annotation deleterious_-_low_confidence; deleterious
SIFT Variant Effect deleterious_-_low_confidence(ENST00000530925); deleterious(ENST00000532265, ENST00000527494, ENST00000525422, ENST00000265965, ENST00000529728, ENST00000532389, ENST00000530613, ENST00000528200)
PolyPhen Annotation possibly_damaging; probably_damaging
PolyPhen Variant Effect possibly_damaging(ENST00000530925); probably_damaging(ENST00000532265, ENST00000527494, ENST00000525422, ENST00000265965, ENST00000529728, ENST00000532389, ENST00000530613, ENST00000528200)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription;Strong transcription;Genic enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SERGEF secretion regulating guanine nucleotide exchange factor 11p14.3 Mapped by LD-proxy, rSNP target

SNPs in LD with rs211137 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx