PTSDgene database

SNP Report

Basic Info
Name rs211126 dbSNP Ensembl
Location 11:17991198 - 17991198(+)
Variant Seq A
Ancestral Allele A
Ref Seq G
Minor Allele Frequence 0.159145
Annotation downstream_gene_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000533328, ENST00000530925); upstream_gene_variant(ENST00000533241); intron_variant(ENST00000532546, ENST00000529440, ENST00000530613, ENST00000525422, ENST00000529151, ENST00000527494, ENST00000532389, ENST00000529728, ENST00000525920, ENST00000532265, ENST00000265965, ENST00000528200); NMD_transcript_variant(ENST00000532546, ENST00000525422, ENST00000527494); non_coding_transcript_variant(ENST00000529440)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000532265, ENST00000532546, ENST00000265965, ENST00000530613, ENST00000525920, ENST00000529728, ENST00000529151, ENST00000532389, ENST00000528200, ENST00000525422)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000532265, ENST00000532546, ENST00000265965, ENST00000530613, ENST00000525920, ENST00000529728, ENST00000529151, ENST00000532389, ENST00000528200, ENST00000525422)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Strong transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SERGEF secretion regulating guanine nucleotide exchange factor 11p14.3 Mapped by LD-proxy, rSNP target

SNPs in LD with rs211126 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx