SNP Report
Basic Info
| Name | rs1353939 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 12:117237548 - 117237548(+) | ||
| Variant Seq | T | ||
| Ancestral Allele | C | ||
| Ref Seq | C | ||
| Minor Allele Frequence | 0.242812 | ||
| Annotation | intron_variant | ||
| Variant Effect | intron_variant(ENST00000338101, ENST00000618760, ENST00000344089, ENST00000317775) | ||
| SIFT Annotation | deleterious | ||
| SIFT Variant Effect | deleterious(ENST00000338101, ENST00000344089, ENST00000618760, ENST00000317775) | ||
| PolyPhen Annotation | probably_damaging | ||
| PolyPhen Variant Effect | probably_damaging(ENST00000338101, ENST00000344089, ENST00000618760, ENST00000317775) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Bruenig, D.,2017(b) | CAPS score | ANOVA: P-value>0.05 ANOVA: P-value>0.05 | This SNP was not associated with PTSD severity. This SNP was not associated with PTSD severity. | Non-significant |
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| NOS1 | nitric oxide synthase 1 | 12q24.22 | 1(1/0/0) |
SNPs in LD with rs1353939 (count: 12)
Literature-origin SNPs (count: 0)
LD-proxies (count: 12)
SNP related eQTL (count: 1)